Transcript: Human NM_002522.4

Homo sapiens neuronal pentraxin 1 (NPTX1), mRNA.

Source:
NCBI, updated 2019-09-10
Taxon:
Homo sapiens (human)
Gene:
NPTX1 (4884)
Length:
5439
CDS:
162..1460

Additional Resources:

NCBI RefSeq record:
NM_002522.4
NBCI Gene record:
NPTX1 (4884)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_002522.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000059530 CTGCGGACCAACTATATGTAT pLKO.1 861 CDS 100% 5.625 7.875 N NPTX1 n/a
2 TRCN0000438680 TGTTAGCTGCGTGCGTGCTTT pLKO_005 1899 3UTR 100% 4.950 6.930 N NPTX1 n/a
3 TRCN0000437598 AGTACAGCCGCCTCAATTCCT pLKO_005 607 CDS 100% 3.000 4.200 N NPTX1 n/a
4 TRCN0000059528 CCCATGGAGATCCTCATCAAT pLKO.1 1032 CDS 100% 5.625 3.938 N NPTX1 n/a
5 TRCN0000447089 CAGAGATGTACGCCTTCACTG pLKO_005 904 CDS 100% 4.050 2.835 N NPTX1 n/a
6 TRCN0000059529 GCAAACTTTGCAATCGCTCAA pLKO.1 563 CDS 100% 4.050 2.835 N NPTX1 n/a
7 TRCN0000439765 ACGAGCTGGTCCTCATTGAGT pLKO_005 1000 CDS 100% 3.000 2.100 N NPTX1 n/a
8 TRCN0000059531 CCTGAGCCAGAAGGAGACCAT pLKO.1 377 CDS 100% 0.880 0.616 N NPTX1 n/a
9 TRCN0000059532 CGACGCGCTTCATCTGCACTT pLKO.1 241 CDS 100% 1.350 0.945 N NPTX1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_002522.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.