Transcript: Human NM_002539.3

Homo sapiens ornithine decarboxylase 1 (ODC1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
ODC1 (4953)
Length:
2476
CDS:
335..1720

Additional Resources:

NCBI RefSeq record:
NM_002539.3
NBCI Gene record:
ODC1 (4953)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_002539.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000344821 ACGGGCGAAAGAGCTAAATAT pLKO_005 880 CDS 100% 15.000 21.000 N ODC1 n/a
2 TRCN0000078434 GCCGACGATCTACTATGTGAT pLKO.1 1540 CDS 100% 4.950 6.930 N ODC1 n/a
3 TRCN0000333415 GCCGACGATCTACTATGTGAT pLKO_005 1540 CDS 100% 4.950 6.930 N ODC1 n/a
4 TRCN0000078436 GCGTCTATGGATCATTTAATT pLKO.1 1296 CDS 100% 15.000 10.500 N ODC1 n/a
5 TRCN0000333342 GCGTCTATGGATCATTTAATT pLKO_005 1296 CDS 100% 15.000 10.500 N ODC1 n/a
6 TRCN0000078435 CCTTGTAAACAAGTATCTCAA pLKO.1 671 CDS 100% 4.950 3.465 N ODC1 n/a
7 TRCN0000078433 GCCATATGGAAGACTAGGATA pLKO.1 1842 3UTR 100% 0.000 0.000 N ODC1 n/a
8 TRCN0000333344 GCCATATGGAAGACTAGGATA pLKO_005 1842 3UTR 100% 0.000 0.000 N ODC1 n/a
9 TRCN0000078437 CCTCCAGAGAGGATTATCTAT pLKO.1 644 CDS 100% 5.625 3.375 N ODC1 n/a
10 TRCN0000333413 CCTCCAGAGAGGATTATCTAT pLKO_005 644 CDS 100% 5.625 3.375 N ODC1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_002539.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.