Transcript: Human NM_002825.7

Homo sapiens pleiotrophin (PTN), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-15
Taxon:
Homo sapiens (human)
Gene:
PTN (5764)
Length:
1482
CDS:
297..803

Additional Resources:

NCBI RefSeq record:
NM_002825.7
NBCI Gene record:
PTN (5764)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_002825.7, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000373341 TCAGCAAACAGGATCAGTTAA pLKO_005 835 3UTR 100% 13.200 18.480 N PTN n/a
2 TRCN0000002775 CGCGGAGTGCAAATACCAGTT pLKO.1 584 CDS 100% 4.050 5.670 N PTN n/a
3 TRCN0000373342 TACTTCTCTTGTTAGGTAATT pLKO_005 1149 3UTR 100% 13.200 9.240 N PTN n/a
4 TRCN0000378970 GCAAACTGACCAAGCCCAAAC pLKO_005 721 CDS 100% 6.000 4.200 N PTN n/a
5 TRCN0000002776 GAAGACCCAGAGATGTAAGAT pLKO.1 536 CDS 100% 5.625 3.938 N PTN n/a
6 TRCN0000010739 ACAATGCCGAATGCCAGAAGA pLKO.1 676 CDS 100% 4.950 3.465 N PTN n/a
7 TRCN0000002774 AGGCAAGAAACAGGAGAAGAT pLKO.1 773 CDS 100% 4.950 3.465 N PTN n/a
8 TRCN0000010738 CTGAAGCGAGCCCTGCACAAT pLKO.1 660 CDS 100% 1.650 1.155 N PTN n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_002825.7, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.