Transcript: Human NM_003930.5

Homo sapiens src kinase associated phosphoprotein 2 (SKAP2), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-07
Taxon:
Homo sapiens (human)
Gene:
SKAP2 (8935)
Length:
3839
CDS:
162..1241

Additional Resources:

NCBI RefSeq record:
NM_003930.5
NBCI Gene record:
SKAP2 (8935)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_003930.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000344004 TTTATGCAGTCGCTCATTAAA pLKO_005 1371 3UTR 100% 15.000 21.000 N SKAP2 n/a
2 TRCN0000177938 GCGTGGTGATGTGATTTACAT pLKO.1 1118 CDS 100% 5.625 7.875 N Skap2 n/a
3 TRCN0000029775 GCCTACATAATGGAGATGTAT pLKO.1 1212 CDS 100% 0.563 0.788 N SKAP2 n/a
4 TRCN0000029776 GCTCCTGATAAACGTATATAT pLKO.1 732 CDS 100% 15.000 10.500 N SKAP2 n/a
5 TRCN0000344003 GCTCCTGATAAACGTATATAT pLKO_005 732 CDS 100% 15.000 10.500 N SKAP2 n/a
6 TRCN0000029777 GCAGATGTTGAAACATTTGTA pLKO.1 225 CDS 100% 5.625 3.938 N SKAP2 n/a
7 TRCN0000344002 GCAGATGTTGAAACATTTGTA pLKO_005 225 CDS 100% 5.625 3.938 N SKAP2 n/a
8 TRCN0000029778 CCAGTGAAAGTGGAAGAACAA pLKO.1 978 CDS 100% 4.950 3.465 N SKAP2 n/a
9 TRCN0000198674 CCCTGAGGAAATTAGGAACCT pLKO.1 200 CDS 100% 2.640 1.848 N Skap2 n/a
10 TRCN0000029774 GCAGATATACTGAAAGGAGAA pLKO.1 246 CDS 100% 4.050 2.430 N SKAP2 n/a
11 TRCN0000344066 GCAGATATACTGAAAGGAGAA pLKO_005 246 CDS 100% 4.050 2.430 N SKAP2 n/a
12 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 2047 3UTR 100% 4.950 2.475 Y ORAI2 n/a
13 TRCN0000179120 CAACATGGTGAAACCCTGTTT pLKO.1 2044 3UTR 100% 4.950 2.475 Y LOC339059 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_003930.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.