Transcript: Human NM_003987.5

Homo sapiens paired box 2 (PAX2), transcript variant a, mRNA.

Source:
NCBI, updated 2019-09-26
Taxon:
Homo sapiens (human)
Gene:
PAX2 (5076)
Length:
4258
CDS:
680..1933

Additional Resources:

NCBI RefSeq record:
NM_003987.5
NBCI Gene record:
PAX2 (5076)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_003987.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000015839 CGTCTCTTCCATCAACAGAAT pLKO.1 1072 CDS 100% 4.950 3.960 N PAX2 n/a
2 TRCN0000015841 GATGAAGTCAAGTCGAGTCTA pLKO.1 1580 CDS 100% 4.950 3.960 N PAX2 n/a
3 TRCN0000085466 ACACTGATCCTGCCCACATTA pLKO.1 1305 CDS 100% 13.200 9.240 N Pax2 n/a
4 TRCN0000428814 AGGCATCAGAGCACATCAAAT pLKO_005 1512 CDS 100% 13.200 9.240 N Pax2 n/a
5 TRCN0000015842 CAGGCATCAGAGCACATCAAA pLKO.1 1511 CDS 100% 5.625 3.938 N PAX2 n/a
6 TRCN0000015838 GCCAAGGAGATTAAGAAGAAA pLKO.1 2416 3UTR 100% 5.625 3.938 N PAX2 n/a
7 TRCN0000015840 CCCAAAGTGGTGGACAAGATT pLKO.1 956 CDS 100% 5.625 3.375 N PAX2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_003987.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.