Transcript: Human NM_005045.4

Homo sapiens reelin (RELN), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-12
Taxon:
Homo sapiens (human)
Gene:
RELN (5649)
Length:
11708
CDS:
303..10685

Additional Resources:

NCBI RefSeq record:
NM_005045.4
NBCI Gene record:
RELN (5649)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_005045.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000051888 CCCAGCATCATCGTGTTATAT pLKO.1 1140 CDS 100% 15.000 10.500 N RELN n/a
2 TRCN0000051890 CCAGGATACATGATGCAGTTT pLKO.1 9648 CDS 100% 4.950 3.465 N RELN n/a
3 TRCN0000051889 CCCAGAATAATCTCCGTAGAA pLKO.1 2763 CDS 100% 4.950 3.465 N RELN n/a
4 TRCN0000051892 GCACGGATGAAAGGAGTCTTA pLKO.1 10488 CDS 100% 4.950 3.465 N RELN n/a
5 TRCN0000051891 CCTCGGAAAGATTCCAGAATT pLKO.1 5455 CDS 100% 0.000 0.000 N RELN n/a
6 TRCN0000140715 GACAGCTCACAATCCAGGTTT pLKO.1 2589 CDS 100% 4.950 2.475 Y TMEM44 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_005045.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.