Transcript: Human NM_005468.3

Homo sapiens N-acetylated alpha-linked acidic dipeptidase like 1 (NAALADL1), mRNA.

Source:
NCBI, updated 2019-06-09
Taxon:
Homo sapiens (human)
Gene:
NAALADL1 (10004)
Length:
2708
CDS:
33..2255

Additional Resources:

NCBI RefSeq record:
NM_005468.3
NBCI Gene record:
NAALADL1 (10004)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_005468.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000073941 AGGCTCCTACTACGAGTATTT pLKO.1 770 CDS 100% 13.200 18.480 N NAALADL1 n/a
2 TRCN0000436493 TGTAACCTCAACGGAACTTTG pLKO_005 918 CDS 100% 10.800 15.120 N NAALADL1 n/a
3 TRCN0000073938 CCAGATGTGGTACAACCCTAT pLKO.1 462 CDS 100% 4.050 5.670 N NAALADL1 n/a
4 TRCN0000073939 CCTCGCAGATCAATCGTGTTT pLKO.1 1242 CDS 100% 4.950 3.960 N NAALADL1 n/a
5 TRCN0000073940 GATGCTCAATGACCAGTTGAT pLKO.1 1991 CDS 100% 4.950 3.465 N NAALADL1 n/a
6 TRCN0000073942 GCATCAAACTTGAAGGCACCA pLKO.1 574 CDS 100% 2.160 1.512 N NAALADL1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_005468.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.