Transcript: Human NM_005484.3

Homo sapiens poly(ADP-ribose) polymerase 2 (PARP2), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-07-23
Taxon:
Homo sapiens (human)
Gene:
PARP2 (10038)
Length:
1904
CDS:
29..1780

Additional Resources:

NCBI RefSeq record:
NM_005484.3
NBCI Gene record:
PARP2 (10038)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_005484.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000007935 GCCTTGCTGTTAAAGGGCAAA pLKO.1 281 CDS 100% 4.050 5.670 N PARP2 n/a
2 TRCN0000235596 TCTGAATCCAGATGGTTATAC pLKO_005 1666 CDS 100% 13.200 10.560 N PARP2 n/a
3 TRCN0000007936 CCGAAGGATTGCTTCAAGGTA pLKO.1 1542 CDS 100% 3.000 2.400 N PARP2 n/a
4 TRCN0000235598 CTTCGGGTACAGGAGTTAATA pLKO_005 734 CDS 100% 15.000 10.500 N PARP2 n/a
5 TRCN0000235599 ACTATCTGATTCAGCTATTAG pLKO_005 420 CDS 100% 13.200 9.240 N PARP2 n/a
6 TRCN0000235597 ACACTATAGAAACCTACATTG pLKO_005 1108 CDS 100% 10.800 7.560 N PARP2 n/a
7 TRCN0000235600 CTCCGTACTCCTCCACTAATC pLKO_005 971 CDS 100% 10.800 7.560 N PARP2 n/a
8 TRCN0000007933 GCCACCAATACTCAGGATGAA pLKO.1 653 CDS 100% 4.950 3.465 N PARP2 n/a
9 TRCN0000007937 GATGAGTAACTGGGTGGGAAT pLKO.1 1321 CDS 100% 4.050 2.835 N PARP2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_005484.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.