Transcript: Human NM_007018.5

Homo sapiens centriolin (CNTRL), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-07-02
Taxon:
Homo sapiens (human)
Gene:
CNTRL (11064)
Length:
7433
CDS:
32..7009

Additional Resources:

NCBI RefSeq record:
NM_007018.5
NBCI Gene record:
CNTRL (11064)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_007018.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000413972 GTACTGAATCTCAGCTATAAT pLKO_005 416 CDS 100% 15.000 21.000 N CNTRL n/a
2 TRCN0000414365 TATCATCGCTCCAAGATATAA pLKO_005 645 CDS 100% 15.000 21.000 N CNTRL n/a
3 TRCN0000434065 CGTGAACTCAACTTATCATAT pLKO_005 479 CDS 100% 13.200 18.480 N CNTRL n/a
4 TRCN0000021281 GCCCTGAAGAAGGATTTAGAA pLKO.1 1856 CDS 100% 5.625 4.500 N CNTRL n/a
5 TRCN0000420643 AGCTCCTTGAGAGGGATAAAC pLKO_005 5307 CDS 100% 13.200 9.240 N CNTRL n/a
6 TRCN0000423547 ATATTACAGAGGCCCTCATTA pLKO_005 276 CDS 100% 13.200 9.240 N CNTRL n/a
7 TRCN0000423526 CATCAGGAGTGGGTTACATAA pLKO_005 3643 CDS 100% 13.200 9.240 N CNTRL n/a
8 TRCN0000412900 GCTAAATTTGAGCCACTAAAT pLKO_005 1118 CDS 100% 13.200 9.240 N CNTRL n/a
9 TRCN0000435260 GGAGAATGAAATTCACTATTT pLKO_005 2767 CDS 100% 13.200 9.240 N CNTRL n/a
10 TRCN0000420464 TGCAGCACAAACTCGACTATC pLKO_005 1372 CDS 100% 10.800 7.560 N CNTRL n/a
11 TRCN0000021282 CCAATGTTTAAGCAAGAAGAA pLKO.1 4630 CDS 100% 4.950 3.465 N CNTRL n/a
12 TRCN0000021280 CCCAAACTAAACGGCAGCTTT pLKO.1 6093 CDS 100% 4.950 3.465 N CNTRL n/a
13 TRCN0000021283 CCTCAATTTGAAAGGCAACAA pLKO.1 622 CDS 100% 4.950 3.465 N CNTRL n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_007018.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.