Transcript: Human NM_007124.2

Homo sapiens utrophin (UTRN), mRNA.

Source:
NCBI, updated 2019-08-04
Taxon:
Homo sapiens (human)
Gene:
UTRN (7402)
Length:
12436
CDS:
93..10394

Additional Resources:

NCBI RefSeq record:
NM_007124.2
NBCI Gene record:
UTRN (7402)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_007124.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000303379 AGCCGACTGGCTGGTATTAAT pLKO_005 6806 CDS 100% 15.000 21.000 N UTRN n/a
2 TRCN0000303321 CTCATCGTACTTCGGAAATTT pLKO_005 6748 CDS 100% 15.000 21.000 N UTRN n/a
3 TRCN0000303320 TCACCGCCAGAGTCGATTATA pLKO_005 9981 CDS 100% 15.000 21.000 N UTRN n/a
4 TRCN0000303381 TATGTTTATCAGCCATATAAC pLKO_005 10892 3UTR 100% 13.200 18.480 N UTRN n/a
5 TRCN0000054287 CCGACATAAACCTGATCTCTT pLKO.1 662 CDS 100% 4.950 6.930 N UTRN n/a
6 TRCN0000054284 CCTGACAAGAAATCCATAATT pLKO.1 804 CDS 100% 15.000 10.500 N UTRN n/a
7 TRCN0000054285 CCCTATTACATCAACCATCAA pLKO.1 8574 CDS 100% 4.950 3.465 N UTRN n/a
8 TRCN0000054286 CCTGCAAGAATTAAGAGACTT pLKO.1 6446 CDS 100% 4.950 3.465 N UTRN n/a
9 TRCN0000054283 GCCCAGATTGAGGAAGTTCTA pLKO.1 5511 CDS 100% 4.950 3.465 N UTRN n/a
10 TRCN0000292035 GCCCAGATTGAGGAAGTTCTA pLKO_005 5511 CDS 100% 4.950 3.465 N UTRN n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_007124.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.