Transcript: Human NM_007335.4

Homo sapiens DLEC1 cilia and flagella associated protein (DLEC1), transcript variant DLEC1-N1, mRNA.

Source:
NCBI, updated 2019-09-28
Taxon:
Homo sapiens (human)
Gene:
DLEC1 (9940)
Length:
6899
CDS:
19..5286

Additional Resources:

NCBI RefSeq record:
NM_007335.4
NBCI Gene record:
DLEC1 (9940)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_007335.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000038721 CCAGAAGATTACTACACCGAT pLKO.1 643 CDS 100% 2.640 3.696 N DLEC1 n/a
2 TRCN0000038720 CCAGTTTATGAGATGGTAATT pLKO.1 1180 CDS 100% 13.200 9.240 N DLEC1 n/a
3 TRCN0000038722 GCTGCTTTCTTCCCTCACTTT pLKO.1 3568 CDS 100% 4.950 3.465 N DLEC1 n/a
4 TRCN0000038723 GCTTTGTTGAACAACCTCCTT pLKO.1 1607 CDS 100% 2.640 1.848 N DLEC1 n/a
5 TRCN0000179120 CAACATGGTGAAACCCTGTTT pLKO.1 6687 3UTR 100% 4.950 2.475 Y LOC339059 n/a
6 TRCN0000166201 CATGGTGAAACCCTGTCTCTA pLKO.1 6690 3UTR 100% 4.950 2.475 Y ORAI2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_007335.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.