Transcript: Human NM_007362.5

Homo sapiens nuclear cap binding protein subunit 2 (NCBP2), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-15
Taxon:
Homo sapiens (human)
Gene:
NCBP2 (22916)
Length:
2101
CDS:
26..496

Additional Resources:

NCBI RefSeq record:
NM_007362.5
NBCI Gene record:
NCBP2 (22916)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_007362.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000303608 TTGCATGAGATAGCCTAATAA pLKO_005 901 3UTR 100% 15.000 21.000 N NCBP2 n/a
2 TRCN0000303541 ACGCCATGCGGTACATAAATG pLKO_005 312 CDS 100% 13.200 18.480 N NCBP2 n/a
3 TRCN0000059995 GAATATTACTCACGCGCAGAT pLKO.1 284 CDS 100% 4.050 5.670 N NCBP2 n/a
4 TRCN0000059993 GCTGTACGTTATATGTTGGAA pLKO.1 141 CDS 100% 3.000 4.200 N NCBP2 n/a
5 TRCN0000303543 AGACTGGGACGCAGGCTTTAA pLKO_005 364 CDS 100% 13.200 9.240 N NCBP2 n/a
6 TRCN0000303544 ATCATTATGGGTCTGGATAAA pLKO_005 230 CDS 100% 13.200 9.240 N NCBP2 n/a
7 TRCN0000059996 CGTCTGGATGACCGAATCATT pLKO.1 338 CDS 100% 5.625 3.938 N NCBP2 n/a
8 TRCN0000059997 ATCTATGAACTCTTCAGCAAA pLKO.1 191 CDS 100% 4.950 3.465 N NCBP2 n/a
9 TRCN0000059994 GTGACAATGAAGAACAAGAAA pLKO.1 105 CDS 100% 5.625 3.375 N NCBP2 n/a
10 TRCN0000299252 GTGACAATGAAGAACAAGAAA pLKO_005 105 CDS 100% 5.625 3.375 N NCBP2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_007362.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.