Transcript: Mouse NM_007578.3

Mus musculus calcium channel, voltage-dependent, P/Q type, alpha 1A subunit (Cacna1a), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-11
Taxon:
Mus musculus (mouse)
Gene:
Cacna1a (12286)
Length:
7929
CDS:
282..7388

Additional Resources:

NCBI RefSeq record:
NM_007578.3
NBCI Gene record:
Cacna1a (12286)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_007578.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000068803 CGCAACAATGTGCTGCGATAT pLKO.1 3951 CDS 100% 10.800 15.120 N Cacna1a n/a
2 TRCN0000069694 CTACTCAGACAGCGAACACTA pLKO.1 6359 CDS 100% 4.950 6.930 N LOC384858 n/a
3 TRCN0000068807 CGACTGGATGACTACTCACTA pLKO.1 6537 CDS 100% 4.950 3.960 N Cacna1a n/a
4 TRCN0000068805 CCAGTATCGAATGTGGCAGTT pLKO.1 4799 CDS 100% 4.050 3.240 N Cacna1a n/a
5 TRCN0000069697 CGACCCAAGGACCGGAAGCAT pLKO.1 6738 CDS 100% 0.000 0.000 N LOC384858 n/a
6 TRCN0000068804 GCAGCAATAATGACTGTGTTT pLKO.1 2253 CDS 100% 4.950 3.465 N Cacna1a n/a
7 TRCN0000068806 CGGAACCATACTTCATTGGAA pLKO.1 694 CDS 100% 3.000 2.100 N Cacna1a n/a
8 TRCN0000069695 CGATACACTGATGTGGACACA pLKO.1 6642 CDS 100% 2.640 1.848 N LOC384858 n/a
9 TRCN0000069696 GCCTGAGGAGAACCAACGGTA pLKO.1 6569 CDS 100% 0.880 0.616 N LOC384858 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_007578.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.