Transcript: Mouse NM_008083.2

Mus musculus growth associated protein 43 (Gap43), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Gap43 (14432)
Length:
1316
CDS:
150..833

Additional Resources:

NCBI RefSeq record:
NM_008083.2
NBCI Gene record:
Gap43 (14432)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_008083.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000078942 GCTGCTAAAGCTACCACTGAT pLKO.1 549 CDS 100% 4.950 6.930 N Gap43 n/a
2 TRCN0000318196 GCTGCTAAAGCTACCACTGAT pLKO_005 549 CDS 100% 4.950 6.930 N Gap43 n/a
3 TRCN0000078941 CTGTAGACGAAGCCAAACCTA pLKO.1 751 CDS 100% 3.000 4.200 N Gap43 n/a
4 TRCN0000349541 CTGTAGACGAAGCCAAACCTA pLKO_005 751 CDS 100% 3.000 4.200 N Gap43 n/a
5 TRCN0000047323 CGTGGACACATAACAAGGAAA pLKO.1 276 CDS 100% 4.950 3.960 N GAP43 n/a
6 TRCN0000078938 GAGTCCACTTTCCTCTCTATT pLKO.1 1152 3UTR 100% 13.200 9.240 N Gap43 n/a
7 TRCN0000318197 GAGTCCACTTTCCTCTCTATT pLKO_005 1152 3UTR 100% 13.200 9.240 N Gap43 n/a
8 TRCN0000078939 GCCGGAAGATAAGGCTCATAA pLKO.1 227 CDS 100% 13.200 9.240 N Gap43 n/a
9 TRCN0000318195 GCCGGAAGATAAGGCTCATAA pLKO_005 227 CDS 100% 13.200 9.240 N Gap43 n/a
10 TRCN0000078940 GCCCGACAGGATGAGGGTAAA pLKO.1 780 CDS 100% 3.600 2.520 N Gap43 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_008083.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.