Transcript: Mouse NM_008132.2

Mus musculus glutamine repeat protein 1 (Glrp1), mRNA.

Source:
NCBI, updated 2015-02-15
Taxon:
Mus musculus (mouse)
Gene:
Glrp1 (14659)
Length:
1957
CDS:
181..705

Additional Resources:

NCBI RefSeq record:
NM_008132.2
NBCI Gene record:
Glrp1 (14659)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_008132.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000246892 TTATGATCATGTGATACATTC pLKO_005 829 3UTR 100% 10.800 15.120 N Glrp1 n/a
2 TRCN0000246889 AGATCCAGGCTCATCATTATG pLKO_005 968 3UTR 100% 13.200 9.240 N Glrp1 n/a
3 TRCN0000246893 CTGCTTCTTGGTGGCATATTG pLKO_005 921 3UTR 100% 13.200 9.240 N Glrp1 n/a
4 TRCN0000246891 ATATAGAAAGACTGGTCATTG pLKO_005 1126 3UTR 100% 10.800 7.560 N Glrp1 n/a
5 TRCN0000191670 GATATTTGAAATCCCAGAAAC pLKO.1 663 CDS 100% 10.800 7.560 N Glrp1 n/a
6 TRCN0000246890 GGCTTATGAGACCCACTTATG pLKO_005 1443 3UTR 100% 10.800 7.560 N Glrp1 n/a
7 TRCN0000190809 GAAAGAGAAGGGCCTACTCTA pLKO.1 236 CDS 100% 4.950 3.465 N Glrp1 n/a
8 TRCN0000191751 GATGATATTTGAAATCCCAGA pLKO.1 660 CDS 100% 2.160 1.512 N Glrp1 n/a
9 TRCN0000215674 GATCATGTGATACATTCAAAT pLKO.1 833 3UTR 100% 13.200 7.920 N Glrp1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_008132.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.