Transcript: Mouse NM_008720.2

Mus musculus Niemann-Pick type C1 (Npc1), mRNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Npc1 (18145)
Length:
5209
CDS:
150..3983

Additional Resources:

NCBI RefSeq record:
NM_008720.2
NBCI Gene record:
Npc1 (18145)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_008720.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000321216 GAACAGTACCTGACCATTATT pLKO_005 3411 CDS 100% 15.000 21.000 N Npc1 n/a
2 TRCN0000012124 CCCGTCTTACTCAGTTACATA pLKO.1 3879 CDS 100% 5.625 7.875 N Npc1 n/a
3 TRCN0000321214 CCCGTCTTACTCAGTTACATA pLKO_005 3879 CDS 100% 5.625 7.875 N Npc1 n/a
4 TRCN0000012123 GCAGTATTAATGGATCTGAAA pLKO.1 4144 3UTR 100% 4.950 6.930 N Npc1 n/a
5 TRCN0000321215 GCAGTATTAATGGATCTGAAA pLKO_005 4144 3UTR 100% 4.950 6.930 N Npc1 n/a
6 TRCN0000012126 GCCAAACGATTCGTATGTGAT pLKO.1 2747 CDS 100% 4.950 6.930 N Npc1 n/a
7 TRCN0000350620 GCCAAACGATTCGTATGTGAT pLKO_005 2747 CDS 100% 4.950 6.930 N Npc1 n/a
8 TRCN0000012125 CCCGTGAATAATTACTACAAT pLKO.1 1845 CDS 100% 5.625 4.500 N Npc1 n/a
9 TRCN0000350621 GGAATCACACTTACGAAATTT pLKO_005 3747 CDS 100% 15.000 10.500 N Npc1 n/a
10 TRCN0000012127 CCCATGAGAAATGCCACCAAA pLKO.1 804 CDS 100% 4.950 2.970 N Npc1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_008720.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.