Transcript: Mouse NM_008808.3

Mus musculus platelet derived growth factor, alpha (Pdgfa), mRNA.

Source:
NCBI, updated 2017-06-18
Taxon:
Mus musculus (mouse)
Gene:
Pdgfa (18590)
Length:
1019
CDS:
183..773

Additional Resources:

NCBI RefSeq record:
NM_008808.3
NBCI Gene record:
Pdgfa (18590)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_008808.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000339544 TTCGCAGGAAGAGAAGTATTG pLKO_005 427 CDS 100% 10.800 15.120 N Pdgfa n/a
2 TRCN0000065691 CTCTTGGAGATAGACTCCGTA pLKO.1 321 CDS 100% 2.640 3.696 N Pdgfa n/a
3 TRCN0000022333 CAAGACCAGGACGGTCATTTA pLKO.1 470 CDS 100% 13.200 9.240 N LOC377602 n/a
4 TRCN0000339543 CAAGACCAGGACGGTCATTTA pLKO_005 470 CDS 100% 13.200 9.240 N Pdgfa n/a
5 TRCN0000339547 CCATGGGTCCCATGCCATTAA pLKO_005 377 CDS 100% 13.200 9.240 N Pdgfa n/a
6 TRCN0000339473 GACATTCCTGAACATACTATG pLKO_005 820 3UTR 100% 10.800 7.560 N Pdgfa n/a
7 TRCN0000339545 TCCAGCGACTCTTGGAGATAG pLKO_005 313 CDS 100% 10.800 7.560 N Pdgfa n/a
8 TRCN0000065692 CATTCGCAGGAAGAGAAGTAT pLKO.1 425 CDS 100% 5.625 3.938 N Pdgfa n/a
9 TRCN0000065689 AGGACGGTCATTTACGAGATA pLKO.1 477 CDS 100% 4.950 3.465 N Pdgfa n/a
10 TRCN0000065690 AGTGGAGTATGTCAGGAAGAA pLKO.1 644 CDS 100% 4.950 3.465 N Pdgfa n/a
11 TRCN0000065688 AGAAGTATTGAGGAAGCCATT pLKO.1 438 CDS 100% 4.050 2.835 N Pdgfa n/a
12 TRCN0000158260 CAGGACGGTCATTTACGAGAT pLKO.1 476 CDS 100% 4.050 2.835 N PDGFA n/a
13 TRCN0000022330 AGGACGGTCATTTACGAGATT pLKO.1 477 CDS 100% 4.950 3.465 N LOC377602 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_008808.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.