Transcript: Mouse NM_009352.3

Mus musculus telomeric repeat binding factor 1 (Terf1), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-03
Taxon:
Mus musculus (mouse)
Gene:
Terf1 (21749)
Length:
2268
CDS:
33..1298

Additional Resources:

NCBI RefSeq record:
NM_009352.3
NBCI Gene record:
Terf1 (21749)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_009352.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000071302 GAACGCCTTATCGCAGTTAAA pLKO.1 950 CDS 100% 13.200 18.480 N Terf1 n/a
2 TRCN0000071298 CCGAACAAGTGTCATGTTAAA pLKO.1 1235 CDS 100% 13.200 9.240 N Terf1 n/a
3 TRCN0000071299 GTATGGAAATTGGCAGCTTTA pLKO.1 544 CDS 100% 10.800 7.560 N Terf1 n/a
4 TRCN0000071300 CCTGATGATTTGGAACTCAAT pLKO.1 455 CDS 100% 4.950 3.465 N Terf1 n/a
5 TRCN0000071301 GAGGCTATTATTCATGGACTA pLKO.1 309 CDS 100% 4.050 2.835 N Terf1 n/a
6 TRCN0000040162 CCCTTGATGCACAGTTTGAAA pLKO.1 403 CDS 100% 5.625 3.938 N TERF1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_009352.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.