Transcript: Mouse NM_009355.2

Mus musculus protease, serine 39 (Prss39), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Prss39 (21755)
Length:
1246
CDS:
28..1131

Additional Resources:

NCBI RefSeq record:
NM_009355.2
NBCI Gene record:
Prss39 (21755)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_009355.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000031317 GCGGAGGTCTCTCTTATTGAT pLKO.1 670 CDS 100% 5.625 7.875 N Prss39 n/a
2 TRCN0000031314 CCCTAATAATCTCTGCTGGAT pLKO.1 588 CDS 100% 2.640 2.112 N Prss39 n/a
3 TRCN0000031318 TCATCTTGCATGAGGACTATA pLKO.1 455 CDS 100% 13.200 9.240 N Prss39 n/a
4 TRCN0000031316 CCAGAAGGAGTTATGTGGCAA pLKO.1 189 CDS 100% 2.640 1.848 N Prss39 n/a
5 TRCN0000031315 GCATCACGGAATATGATGTTA pLKO.1 731 CDS 100% 0.563 0.394 N Prss39 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_009355.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.