Transcript: Mouse NM_009668.2

Mus musculus bridging integrator 1 (Bin1), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-04-15
Taxon:
Mus musculus (mouse)
Gene:
Bin1 (30948)
Length:
2468
CDS:
191..1957

Additional Resources:

NCBI RefSeq record:
NM_009668.2
NBCI Gene record:
Bin1 (30948)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_009668.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000238137 CAAACTAACCTGCTCCGAAAT pLKO_005 779 CDS 100% 10.800 15.120 N Bin1 n/a
2 TRCN0000088190 CCTGATATCAAGTCGCGCATT pLKO.1 590 CDS 100% 4.050 5.670 N Bin1 n/a
3 TRCN0000088189 CCGGGATTCATGTTCAAGGTT pLKO.1 1730 CDS 100% 3.000 4.200 N Bin1 n/a
4 TRCN0000238136 GACCTATCTGGCTTCTGTTAA pLKO_005 388 CDS 100% 13.200 9.240 N Bin1 n/a
5 TRCN0000380696 ACACCCTCTGGTCAGTCAATC pLKO_005 1418 CDS 100% 10.800 7.560 N Bin1 n/a
6 TRCN0000257035 AGACGAAGGACGAGCAGTTTG pLKO_005 303 CDS 100% 10.800 7.560 N Bin1 n/a
7 TRCN0000380702 AGCTCAATCAGAACCTCAATG pLKO_005 963 CDS 100% 10.800 7.560 N Bin1 n/a
8 TRCN0000380439 CTGATGAGCTGCAACTCAAAG pLKO_005 1782 CDS 100% 10.800 7.560 N Bin1 n/a
9 TRCN0000257057 GCGATGTGGTGTTGGTGATTC pLKO_005 1806 CDS 100% 10.800 7.560 N Bin1 n/a
10 TRCN0000238138 CCCGAGTGTGAAGAACCTTTC pLKO_005 1970 3UTR 100% 6.000 4.200 N Bin1 n/a
11 TRCN0000088191 ACTTCCATAAAGAGATGAGTA pLKO.1 942 CDS 100% 4.950 3.465 N Bin1 n/a
12 TRCN0000088188 GAAACCTAAGCCAAGAGGTAT pLKO.1 2092 3UTR 100% 4.950 3.465 N Bin1 n/a
13 TRCN0000379747 TCAGTGGACTTCTCCAGTGTT pLKO_005 2158 3UTR 100% 4.950 3.465 N Bin1 n/a
14 TRCN0000088192 TGACGCATTTGTCCCTGAGAT pLKO.1 1282 CDS 100% 4.950 3.465 N Bin1 n/a
15 TRCN0000382367 TCAAAGCCCAGAAGGTGTTTG pLKO_005 819 CDS 100% 10.800 15.120 N BIN1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_009668.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.