Transcript: Mouse NM_010437.2

Mus musculus human immunodeficiency virus type I enhancer binding protein 2 (Hivep2), mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Hivep2 (15273)
Length:
9788
CDS:
834..8126

Additional Resources:

NCBI RefSeq record:
NM_010437.2
NBCI Gene record:
Hivep2 (15273)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_010437.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000095775 CGGAGTAAATCGTTTGATTAT pLKO.1 3948 CDS 100% 13.200 18.480 N Hivep2 n/a
2 TRCN0000271869 TTCGTCATTGATCAGCTATTT pLKO_005 6680 CDS 100% 13.200 18.480 N Hivep2 n/a
3 TRCN0000022094 CGGCCTTATGTATGCAAGTTA pLKO.1 6258 CDS 100% 5.625 7.875 N HIVEP2 n/a
4 TRCN0000284539 GTCGCCTCTGAGGACCTATTT pLKO_005 1230 CDS 100% 13.200 10.560 N Hivep2 n/a
5 TRCN0000271872 CATGTTGAAGACCACGAAATT pLKO_005 2306 CDS 100% 13.200 9.240 N Hivep2 n/a
6 TRCN0000284573 CTTGGATCTAAACGATGTAAA pLKO_005 8489 3UTR 100% 13.200 9.240 N Hivep2 n/a
7 TRCN0000095777 GCCGTAAACCATACAAGAAAT pLKO.1 2755 CDS 100% 13.200 9.240 N Hivep2 n/a
8 TRCN0000284538 GTGCGAAACCCAGCGTCTTAA pLKO_005 1426 CDS 100% 13.200 9.240 N Hivep2 n/a
9 TRCN0000095774 GCTCTGATTCTGTAATACTAA pLKO.1 8590 3UTR 100% 5.625 3.938 N Hivep2 n/a
10 TRCN0000095778 GCAATGAACCTTCACCAGAAA pLKO.1 8089 CDS 100% 4.950 3.465 N Hivep2 n/a
11 TRCN0000236545 TTTGGACACTTGGATCTAAAT pLKO_005 8481 3UTR 100% 13.200 9.240 N HIVEP2 n/a
12 TRCN0000022095 GCCTTGTTTCAGTTTCAGTAT pLKO.1 4407 CDS 100% 4.950 3.465 N HIVEP2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_010437.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.