Transcript: Mouse NM_010642.3

Mus musculus kallikrein 1-related peptidase b21 (Klk1b21), mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Klk1b21 (16616)
Length:
907
CDS:
73..858

Additional Resources:

NCBI RefSeq record:
NM_010642.3
NBCI Gene record:
Klk1b21 (16616)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_010642.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000031777 GCCAAAGCCTACATACATAAA pLKO.1 625 CDS 100% 13.200 7.920 N Klk1b21 n/a
2 TRCN0000417259 TCGAATTGTTGGAGGATTTAA pLKO_005 141 CDS 100% 15.000 7.500 Y Klk1b11 n/a
3 TRCN0000031774 TGCTATGGCAACCAGTATAAT pLKO.1 268 CDS 100% 15.000 7.500 Y Klk1b21 n/a
4 TRCN0000031343 CTCGAATTGTTGGAGGATTTA pLKO.1 140 CDS 100% 13.200 6.600 Y Klk1 n/a
5 TRCN0000031775 GCAGCATTACACCCACGAAAT pLKO.1 545 CDS 100% 10.800 5.400 Y Klk1b21 n/a
6 TRCN0000031340 CCTGAGGATGACTACAGCAAT pLKO.1 409 CDS 100% 4.950 2.475 Y Klk1 n/a
7 TRCN0000032114 TGGAGGATTTAACTGTGAGAA pLKO.1 150 CDS 100% 4.950 2.475 Y Klk1b26 n/a
8 TRCN0000031747 CCACTGATCTGTGATGGTGTT pLKO.1 718 CDS 100% 4.050 2.025 Y Klk1b5 n/a
9 TRCN0000031778 CCACTGCTATGGCAACCAGTA pLKO.1 264 CDS 100% 4.050 2.025 Y Klk1b21 n/a
10 TRCN0000031776 GATGTTACTACGCCTCAGCAA pLKO.1 435 CDS 100% 2.640 1.320 Y Klk1b21 n/a
11 TRCN0000032026 CCCACTGATCTGTGATGGTAT pLKO.1 717 CDS 100% 4.950 2.475 Y Klk1b4 n/a
12 TRCN0000031306 CCTGCTGACATCACAGATGTT pLKO.1 457 CDS 100% 4.950 2.475 Y Klk1b1 n/a
13 TRCN0000421241 AGCATTACACCCACGAAATTC pLKO_005 547 CDS 100% 13.200 6.600 Y Klk1b11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_010642.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.