Transcript: Mouse NM_010872.3

Mus musculus NLR family, apoptosis inhibitory protein 2 (Naip2), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-03
Taxon:
Mus musculus (mouse)
Gene:
Naip2 (17948)
Length:
4853
CDS:
214..4557

Additional Resources:

NCBI RefSeq record:
NM_010872.3
NBCI Gene record:
Naip2 (17948)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_010872.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000114752 CCATCCAGAAACCTTGTTGTT pLKO.1 3060 CDS 100% 4.950 6.930 N Naip2 n/a
2 TRCN0000318163 CCATCCAGAAACCTTGTTGTT pLKO_005 3060 CDS 100% 4.950 6.930 N Naip2 n/a
3 TRCN0000114754 CCATTGCCTTTCAACCTATAA pLKO.1 3197 CDS 100% 13.200 9.240 N Naip2 n/a
4 TRCN0000318164 CCATTGCCTTTCAACCTATAA pLKO_005 3197 CDS 100% 13.200 9.240 N Naip2 n/a
5 TRCN0000114753 GCCATTGCCTTTCAACCTATA pLKO.1 3196 CDS 100% 10.800 7.560 N Naip2 n/a
6 TRCN0000114755 CTTTCAGTCTTGAAGAGACAA pLKO.1 307 CDS 100% 4.950 3.465 N Naip2 n/a
7 TRCN0000318162 CTTTCAGTCTTGAAGAGACAA pLKO_005 307 CDS 100% 4.950 3.465 N Naip2 n/a
8 TRCN0000114751 GCTTAAGAGCACCGTGATCTT pLKO.1 4703 3UTR 100% 4.950 3.465 N Naip2 n/a
9 TRCN0000318089 GCTTAAGAGCACCGTGATCTT pLKO_005 4703 3UTR 100% 4.950 3.465 N Naip2 n/a
10 TRCN0000339397 CAGTGAAGCCAAACGACTAAA pLKO_005 387 CDS 100% 13.200 6.600 Y Naip6 n/a
11 TRCN0000177680 CCATCTGTAATGGGATCTGAT pLKO.1 4771 3UTR 100% 4.950 2.475 Y Etfrf1 n/a
12 TRCN0000114745 CGCCAACAGTTGTATCTCATT pLKO.1 2756 CDS 100% 4.950 2.475 Y Naip5 n/a
13 TRCN0000201113 CCTGAGTTCAATTCTCAGCAA pLKO.1 4732 3UTR 100% 0.264 0.132 Y Ripply3 n/a
14 TRCN0000114757 CCCTTCTATAATACTGTCTTT pLKO.1 2152 CDS 100% 4.950 2.475 Y Naip6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_010872.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.