Transcript: Mouse NM_010924.3

Mus musculus nicotinamide N-methyltransferase (Nnmt), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Nnmt (18113)
Length:
1013
CDS:
166..960

Additional Resources:

NCBI RefSeq record:
NM_010924.3
NBCI Gene record:
Nnmt (18113)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_010924.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000314089 AGAGTAGCTACTACATGATTG pLKO_005 764 CDS 100% 10.800 15.120 N Nnmt n/a
2 TRCN0000097466 GTGCAATCAAGCAGGTACTAA pLKO.1 563 CDS 100% 5.625 7.875 N Nnmt n/a
3 TRCN0000317885 GTGCAATCAAGCAGGTACTAA pLKO_005 563 CDS 100% 5.625 7.875 N Nnmt n/a
4 TRCN0000097464 CGTGCAATCAAGCAGGTACTA pLKO.1 562 CDS 100% 4.950 6.930 N Nnmt n/a
5 TRCN0000314088 ATTCTGCCTGGGTGCTGTAAA pLKO_005 309 CDS 100% 13.200 9.240 N Nnmt n/a
6 TRCN0000097465 GTCACCTATGTGTGTGATCTT pLKO.1 496 CDS 100% 4.950 3.465 N Nnmt n/a
7 TRCN0000097467 TGAGTCCTTCACGGAGATCAT pLKO.1 390 CDS 100% 4.950 3.465 N Nnmt n/a
8 TRCN0000317884 TGAGTCCTTCACGGAGATCAT pLKO_005 390 CDS 100% 4.950 3.465 N Nnmt n/a
9 TRCN0000314039 GGCTTCCTGGTGATGGTAGAT pLKO_005 736 CDS 100% 4.950 2.970 N Nnmt n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_010924.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.