Transcript: Mouse NM_011381.4

Mus musculus sine oculis-related homeobox 3 (Six3), mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Six3 (20473)
Length:
3680
CDS:
407..1408

Additional Resources:

NCBI RefSeq record:
NM_011381.4
NBCI Gene record:
Six3 (20473)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_011381.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000015308 CCCACCTGCATGACGATTTAT pLKO.1 1786 3UTR 100% 15.000 21.000 N SIX3 n/a
2 TRCN0000070784 CCACTTCTTGTTGCCAAACTT pLKO.1 442 CDS 100% 5.625 7.875 N Six3 n/a
3 TRCN0000015309 GCGACTCGGAATGTGATGTAT pLKO.1 1386 CDS 100% 5.625 7.875 N SIX3 n/a
4 TRCN0000015311 CCCGGAAGAGTTGTCCATGTT pLKO.1 628 CDS 100% 4.950 6.930 N SIX3 n/a
5 TRCN0000412565 TTGCCAAACTTCGCCGATTCT pLKO_005 452 CDS 100% 4.950 6.930 N SIX3 n/a
6 TRCN0000428202 ATCAACAAACACGAGTCGATC pLKO_005 782 CDS 100% 4.050 5.670 N SIX3 n/a
7 TRCN0000070786 CGAGCAGAAGACCCATTGCTT pLKO.1 1027 CDS 100% 3.000 4.200 N Six3 n/a
8 TRCN0000015312 AGTAGGCAACTGGTTTAAGAA pLKO.1 1156 CDS 100% 5.625 3.938 N SIX3 n/a
9 TRCN0000070787 CCTGTACCACATCCTGGAGAA pLKO.1 850 CDS 100% 4.050 2.835 N Six3 n/a
10 TRCN0000070785 GCTCCCTACTTCTGGCGAGTA pLKO.1 480 CDS 100% 1.350 0.945 N Six3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_011381.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.