Transcript: Mouse NM_011848.4

Mus musculus NIMA (never in mitosis gene a)-related expressed kinase 3 (Nek3), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Nek3 (23954)
Length:
2044
CDS:
113..1642

Additional Resources:

NCBI RefSeq record:
NM_011848.4
NBCI Gene record:
Nek3 (23954)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_011848.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000379019 TAACTCCTTTGATCCCAAATC pLKO_005 1869 3UTR 100% 10.800 15.120 N Nek3 n/a
2 TRCN0000376766 GTACGTGGGAACACCTTATTA pLKO_005 589 CDS 100% 15.000 12.000 N Nek3 n/a
3 TRCN0000222253 CCCTGAAGACACGATACTTAA pLKO.1 403 CDS 100% 13.200 10.560 N Nek3 n/a
4 TRCN0000366002 ACACGATACTTAATTGGTTTA pLKO_005 411 CDS 100% 10.800 8.640 N Nek3 n/a
5 TRCN0000366077 GATCTGATGCAGAGGATTAAA pLKO_005 362 CDS 100% 15.000 10.500 N Nek3 n/a
6 TRCN0000374392 AGCATCCATTCCAGGCAAATA pLKO_005 702 CDS 100% 13.200 9.240 N Nek3 n/a
7 TRCN0000374321 TCCAGAACCCTTGCGAGATTT pLKO_005 1743 3UTR 100% 13.200 9.240 N Nek3 n/a
8 TRCN0000222256 GCTGATCTCAGTCAGGCATTT pLKO.1 1367 CDS 100% 10.800 7.560 N Nek3 n/a
9 TRCN0000222255 GTAGCCATACTGAATTGGAAA pLKO.1 1059 CDS 100% 4.950 3.465 N Nek3 n/a
10 TRCN0000001472 CCTTATTATGTGCCTCCAGAA pLKO.1 602 CDS 100% 4.050 2.835 N NEK3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_011848.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.