Transcript: Mouse NM_011940.2

Mus musculus interferon activated gene 202B (Ifi202b), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Ifi202b (26388)
Length:
1793
CDS:
222..1559

Additional Resources:

NCBI RefSeq record:
NM_011940.2
NBCI Gene record:
Ifi202b (26388)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_011940.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000424259 AGACTCATAGAACATCTTAAA pLKO_005 1266 CDS 100% 13.200 7.920 N Ifi202b n/a
2 TRCN0000430848 AGATCTACGAGGTACAGTTAC pLKO_005 1512 CDS 100% 10.800 6.480 N Ifi202b n/a
3 TRCN0000423594 AGCCAATATTACCGTGTGAAA pLKO_005 492 CDS 100% 4.950 2.970 N Ifi202b n/a
4 TRCN0000419438 AGCCTCTCCTGGACCTAACAA pLKO_005 326 CDS 100% 5.625 2.813 Y Ifi202b n/a
5 TRCN0000077340 ACACTGATTTATGGTGTGTTT pLKO.1 723 CDS 100% 4.950 2.475 Y Ifi202b n/a
6 TRCN0000077339 GAGCAATGAAAGTGGTGGTAT pLKO.1 1399 CDS 100% 4.950 2.475 Y Ifi202b n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_011940.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.