Transcript: Human NM_012099.2

Homo sapiens CD3e molecule associated protein (CD3EAP), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-12
Taxon:
Homo sapiens (human)
Gene:
CD3EAP (10849)
Length:
2851
CDS:
54..1586

Additional Resources:

NCBI RefSeq record:
NM_012099.2
NBCI Gene record:
CD3EAP (10849)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_012099.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000139330 CCGGGAAACTGAGGAACTAAA pLKO.1 1594 3UTR 100% 13.200 18.480 N CD3EAP n/a
2 TRCN0000140720 GATACGGAGCTGTGGCTTATT pLKO.1 168 CDS 100% 13.200 18.480 N CD3EAP n/a
3 TRCN0000140131 GACAGTGAAGCAGGAACAGAT pLKO.1 854 CDS 100% 4.950 3.465 N CD3EAP n/a
4 TRCN0000139999 GCCAGAAGACAAGACAGTGAA pLKO.1 842 CDS 100% 4.950 3.465 N CD3EAP n/a
5 TRCN0000142726 CAGATTAACACTGAGCCTCTA pLKO.1 870 CDS 100% 4.050 2.835 N CD3EAP n/a
6 TRCN0000143643 CCAGTCATTAAAGGAGCTGTT pLKO.1 1840 3UTR 100% 4.050 2.835 N CD3EAP n/a
7 TRCN0000140204 GAAAGAGAGAGGTCACACAGT pLKO.1 1334 CDS 100% 2.640 1.848 N CD3EAP n/a
8 TRCN0000143184 GCAGGAACAGATTAACACTGA pLKO.1 863 CDS 100% 2.640 1.848 N CD3EAP n/a
9 TRCN0000140521 GAAAGAAACCTTCGAGCCAGA pLKO.1 827 CDS 100% 2.160 1.512 N CD3EAP n/a
10 TRCN0000140501 GCCCAAAGGGAAAGAAACCTT pLKO.1 818 CDS 100% 3.000 1.800 N CD3EAP n/a
11 TRCN0000139797 CAAGAAGAGGAAGAAGCCCAA pLKO.1 803 CDS 100% 2.160 1.296 N CD3EAP n/a
12 TRCN0000140657 CCTCCCAAAGTGCTAGGATAA pLKO.1 2522 3UTR 100% 10.800 5.400 Y CD3EAP n/a
13 TRCN0000072628 CCTCCCAAAGTGCTAGGATTA pLKO.1 2522 3UTR 100% 10.800 5.400 Y MRPS16 n/a
14 TRCN0000160007 CAAGAAGAAGAAGAAGAAGTA pLKO.1 1316 CDS 100% 4.950 2.475 Y FAM98C n/a
15 TRCN0000197864 GAAGAAGAAGAAAGAGAGAGA pLKO.1 1325 CDS 100% 2.640 1.320 Y C230029F24Rik n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_012099.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.