Transcript: Human NM_014141.6

Homo sapiens contactin associated protein like 2 (CNTNAP2), mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CNTNAP2 (26047)
Length:
9454
CDS:
77..4072

Additional Resources:

NCBI RefSeq record:
NM_014141.6
NBCI Gene record:
CNTNAP2 (26047)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_014141.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000420933 GATGAGCCAAATCGATATTTC pLKO_005 1399 CDS 100% 13.200 18.480 N CNTNAP2 n/a
2 TRCN0000119131 CCTAGAGAGATACCACGGTTA pLKO.1 3016 CDS 100% 4.050 5.670 N CNTNAP2 n/a
3 TRCN0000417157 ACTACAATGGCGTCAACATTA pLKO_005 1098 CDS 100% 13.200 9.240 N CNTNAP2 n/a
4 TRCN0000119130 CGAGCAGTATGTCTCCTATTT pLKO.1 2122 CDS 100% 13.200 9.240 N CNTNAP2 n/a
5 TRCN0000119128 GCGAGCAGTATGTCTCCTATT pLKO.1 2121 CDS 100% 10.800 7.560 N CNTNAP2 n/a
6 TRCN0000119127 GCCAGATGTTATGATTTGTTT pLKO.1 4952 3UTR 100% 5.625 3.938 N CNTNAP2 n/a
7 TRCN0000119129 CCCTATCATCAAGATGGGAAT pLKO.1 452 CDS 100% 4.050 2.835 N CNTNAP2 n/a
8 TRCN0000165027 GAACTCCTGACCTCAAGTGAT pLKO.1 8120 3UTR 100% 4.950 2.475 Y LOC387873 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_014141.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.