Transcript: Human NM_014258.4

Homo sapiens synaptonemal complex protein 2 (SYCP2), mRNA.

Source:
NCBI, updated 2019-09-22
Taxon:
Homo sapiens (human)
Gene:
SYCP2 (10388)
Length:
5541
CDS:
209..4801

Additional Resources:

NCBI RefSeq record:
NM_014258.4
NBCI Gene record:
SYCP2 (10388)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_014258.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000229944 AGTCAGGACTCTAGGATTAAA pLKO_005 4415 CDS 100% 15.000 21.000 N SYCP2 n/a
2 TRCN0000155370 CCGAAGCAAGTGTACCCTTTA pLKO.1 4899 3UTR 100% 10.800 15.120 N SYCP2 n/a
3 TRCN0000151649 CGAGATAATTGCCTTGACTTA pLKO.1 3488 CDS 100% 4.950 6.930 N SYCP2 n/a
4 TRCN0000218004 CAATTGAAGAATCGCTGATAT pLKO_005 2403 CDS 100% 13.200 10.560 N SYCP2 n/a
5 TRCN0000152105 CCTTTATAGGAACCCTCAAAT pLKO.1 4914 3UTR 100% 13.200 10.560 N SYCP2 n/a
6 TRCN0000151431 GCAGATCATCATATCCACAAA pLKO.1 4175 CDS 100% 4.950 3.960 N SYCP2 n/a
7 TRCN0000150677 GCTATTCAGATGTAAGCAGTT pLKO.1 3855 CDS 100% 4.050 3.240 N SYCP2 n/a
8 TRCN0000229943 ATGACAGCAAGACTGATATTA pLKO_005 3042 CDS 100% 15.000 10.500 N SYCP2 n/a
9 TRCN0000229945 GCTACTACATTGCCTAAATAT pLKO_005 5353 3UTR 100% 15.000 10.500 N SYCP2 n/a
10 TRCN0000218769 TGGACTTCTAACGATGATAAA pLKO_005 466 CDS 100% 13.200 9.240 N SYCP2 n/a
11 TRCN0000151648 CGGTTCTCCTAAATAAGACAA pLKO.1 2385 CDS 100% 4.950 3.465 N SYCP2 n/a
12 TRCN0000154469 GCCCAGAAGACTTCTGTCTAT pLKO.1 4989 3UTR 100% 4.950 3.465 N SYCP2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_014258.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.