Transcript: Human NM_014285.7

Homo sapiens exosome component 2 (EXOSC2), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-06
Taxon:
Homo sapiens (human)
Gene:
EXOSC2 (23404)
Length:
2012
CDS:
13..894

Additional Resources:

NCBI RefSeq record:
NM_014285.7
NBCI Gene record:
EXOSC2 (23404)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_014285.7, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000049843 CGCGACACTAAGAAACATCTA pLKO.1 70 CDS 100% 4.950 3.960 N EXOSC2 n/a
2 TRCN0000369628 GGGCTCCCATCCTGGAATAAT pLKO_005 1166 3UTR 100% 15.000 10.500 N EXOSC2 n/a
3 TRCN0000369627 TCCATTCCTATATCCTTTAAA pLKO_005 1298 3UTR 100% 15.000 10.500 N EXOSC2 n/a
4 TRCN0000049844 GACATCTTAAAGCCAGAAATA pLKO.1 820 CDS 100% 13.200 9.240 N EXOSC2 n/a
5 TRCN0000318911 GACATCTTAAAGCCAGAAATA pLKO_005 820 CDS 100% 13.200 9.240 N EXOSC2 n/a
6 TRCN0000049846 GAGAAGCTCATTGCATCTGTT pLKO.1 160 CDS 100% 4.950 3.465 N EXOSC2 n/a
7 TRCN0000318908 GAGAAGCTCATTGCATCTGTT pLKO_005 160 CDS 100% 4.950 3.465 N EXOSC2 n/a
8 TRCN0000049845 CCCACTTTCATGATTTGCCAT pLKO.1 563 CDS 100% 2.640 1.848 N EXOSC2 n/a
9 TRCN0000318910 CCCACTTTCATGATTTGCCAT pLKO_005 563 CDS 100% 2.640 1.848 N EXOSC2 n/a
10 TRCN0000049847 GCTGTATGATACCAGCATCCT pLKO.1 762 CDS 100% 2.640 1.848 N EXOSC2 n/a
11 TRCN0000084008 CGCCTATAATCCCAGCACTTT pLKO.1 1387 3UTR 100% 4.950 2.475 Y NPHS1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_014285.7, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.