Transcript: Human NM_015042.2

Homo sapiens zinc finger protein 609 (ZNF609), mRNA.

Source:
NCBI, updated 2019-08-07
Taxon:
Homo sapiens (human)
Gene:
ZNF609 (23060)
Length:
9006
CDS:
389..4624

Additional Resources:

NCBI RefSeq record:
NM_015042.2
NBCI Gene record:
ZNF609 (23060)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_015042.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000219871 CAAGCGTGTCCGTACTAATTC pLKO.1 1768 CDS 100% 13.200 18.480 N ZNF609 n/a
2 TRCN0000183857 CCCATTTACATGAGCACATAT pLKO.1 5232 3UTR 100% 13.200 18.480 N ZNF609 n/a
3 TRCN0000219873 GAGCAAGTCTCCCACGATAAG pLKO.1 4318 CDS 100% 10.800 15.120 N ZNF609 n/a
4 TRCN0000179391 GCCGAACAGTTGGTTAAAGAA pLKO.1 2987 CDS 100% 5.625 7.875 N ZNF609 n/a
5 TRCN0000130432 GCACAGTACAACTTACCCTAT pLKO.1 4523 CDS 100% 4.050 5.670 N ZNF609 n/a
6 TRCN0000219872 AGTACGGAGAGGAACCTATTC pLKO.1 1989 CDS 100% 10.800 7.560 N ZNF609 n/a
7 TRCN0000128737 CAGAGCAAAGACTCACCATAT pLKO.1 3041 CDS 100% 10.800 7.560 N ZNF609 n/a
8 TRCN0000131000 CCTGAGAGCATAGAAGGGAAA pLKO.1 3182 CDS 100% 4.050 2.835 N ZNF609 n/a
9 TRCN0000131108 GCAGTACGAAGAACAGCAGAA pLKO.1 3397 CDS 100% 4.050 2.835 N ZNF609 n/a
10 TRCN0000180097 CCTGTCATCTAGCCATCTGAT pLKO.1 5677 3UTR 100% 4.950 2.970 N ZNF609 n/a
11 TRCN0000059702 GATGGGAAGGAAAGCACAATA pLKO.1 3932 CDS 100% 13.200 6.600 Y FABP5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_015042.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.