Transcript: Human NM_015313.3

Homo sapiens Rho guanine nucleotide exchange factor 12 (ARHGEF12), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
ARHGEF12 (23365)
Length:
10326
CDS:
832..5466

Additional Resources:

NCBI RefSeq record:
NM_015313.3
NBCI Gene record:
ARHGEF12 (23365)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_015313.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000047478 CGTCGCATCTTCCTTGAGTTT pLKO.1 2086 CDS 100% 4.950 6.930 N ARHGEF12 n/a
2 TRCN0000298872 CGTCGCATCTTCCTTGAGTTT pLKO_005 2086 CDS 100% 4.950 6.930 N ARHGEF12 n/a
3 TRCN0000047480 GCGTTGCGTAATCATCCAGAA pLKO.1 1041 CDS 100% 4.050 5.670 N ARHGEF12 n/a
4 TRCN0000298942 GCGTTGCGTAATCATCCAGAA pLKO_005 1041 CDS 100% 4.050 5.670 N ARHGEF12 n/a
5 TRCN0000047481 CCAGAAGTTCAAAGGCACTTA pLKO.1 2251 CDS 100% 4.950 3.465 N ARHGEF12 n/a
6 TRCN0000298870 CCAGAAGTTCAAAGGCACTTA pLKO_005 2251 CDS 100% 4.950 3.465 N ARHGEF12 n/a
7 TRCN0000047482 GCGAGTATCCAGAGAAGGAAT pLKO.1 3276 CDS 100% 4.950 3.465 N ARHGEF12 n/a
8 TRCN0000298941 GCGAGTATCCAGAGAAGGAAT pLKO_005 3276 CDS 100% 4.950 3.465 N ARHGEF12 n/a
9 TRCN0000047479 CCACTCAAATGCAAAGGCTTA pLKO.1 3623 CDS 100% 4.050 2.835 N ARHGEF12 n/a
10 TRCN0000298869 CCACTCAAATGCAAAGGCTTA pLKO_005 3623 CDS 100% 4.050 2.835 N ARHGEF12 n/a
11 TRCN0000109963 CCTCAGTCTCATTCACTGAAT pLKO.1 4405 CDS 100% 0.495 0.347 N Arhgef12 n/a
12 TRCN0000326911 CCTCAGTCTCATTCACTGAAT pLKO_005 4405 CDS 100% 0.495 0.347 N Arhgef12 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_015313.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.