Transcript: Mouse NM_015803.2

Mus musculus ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 (Atp8a2), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Atp8a2 (50769)
Length:
3685
CDS:
153..3599

Additional Resources:

NCBI RefSeq record:
NM_015803.2
NBCI Gene record:
Atp8a2 (50769)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_015803.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000101817 GCATAATTTACCTCAACCAAT pLKO.1 199 CDS 100% 4.950 6.930 N Atp8a2 n/a
2 TRCN0000101815 CGCATAATTTACCTCAACCAA pLKO.1 198 CDS 100% 3.000 4.200 N Atp8a2 n/a
3 TRCN0000101818 CCTCTTCATAAACTGGGACAT pLKO.1 1202 CDS 100% 4.050 3.240 N Atp8a2 n/a
4 TRCN0000101816 GCTACCAACAACTCAGATTAT pLKO.1 2568 CDS 100% 13.200 9.240 N Atp8a2 n/a
5 TRCN0000101819 CGGATGACTTCTTGTACCAAT pLKO.1 1431 CDS 100% 4.950 3.465 N Atp8a2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_015803.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.