Transcript: Human NM_017852.5

Homo sapiens NLR family pyrin domain containing 2 (NLRP2), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-27
Taxon:
Homo sapiens (human)
Gene:
NLRP2 (55655)
Length:
3540
CDS:
112..3300

Additional Resources:

NCBI RefSeq record:
NM_017852.5
NBCI Gene record:
NLRP2 (55655)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_017852.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000128206 CAAGCGTTTACAGAAACGAAA pLKO.1 505 CDS 100% 0.495 0.693 N NLRP2 n/a
2 TRCN0000129801 CTCAGGGATAATGAGTTCATT pLKO.1 3392 3UTR 100% 5.625 3.938 N NLRP2 n/a
3 TRCN0000280690 CTCAGGGATAATGAGTTCATT pLKO_005 3392 3UTR 100% 5.625 3.938 N NLRP2 n/a
4 TRCN0000130989 CCAGGTTATGGCTGAGAGATA pLKO.1 657 CDS 100% 4.950 3.465 N NLRP2 n/a
5 TRCN0000280624 CCAGGTTATGGCTGAGAGATA pLKO_005 657 CDS 100% 4.950 3.465 N NLRP2 n/a
6 TRCN0000128546 GCAGGTAATAAAGGAGAATCT pLKO.1 2076 CDS 100% 4.950 3.465 N NLRP2 n/a
7 TRCN0000280689 GCAGGTAATAAAGGAGAATCT pLKO_005 2076 CDS 100% 4.950 3.465 N NLRP2 n/a
8 TRCN0000128382 GAGTCATTCATTCTCCATGAA pLKO.1 3309 3UTR 100% 0.495 0.347 N NLRP2 n/a
9 TRCN0000128236 GCTGAATCACATAGGAGTTAA pLKO.1 2910 CDS 100% 13.200 7.920 N NLRP2 n/a
10 TRCN0000280688 GCTGAATCACATAGGAGTTAA pLKO_005 2910 CDS 100% 13.200 7.920 N NLRP2 n/a
11 TRCN0000127655 CTCAATAAGCTGCTGGAAGAA pLKO.1 3190 CDS 100% 4.950 2.970 N NLRP2 n/a
12 TRCN0000130061 GAAGATGCTGTTTGAAACCTT pLKO.1 3108 CDS 100% 3.000 1.800 N NLRP2 n/a
13 TRCN0000280691 GAAGATGCTGTTTGAAACCTT pLKO_005 3108 CDS 100% 3.000 1.800 N NLRP2 n/a
14 TRCN0000130867 GAACTCAATAAGCTGCTGGAA pLKO.1 3187 CDS 100% 2.640 1.584 N NLRP2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_017852.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.