Transcript: Human NM_018150.4

Homo sapiens ring finger protein 220 (RNF220), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-05-02
Taxon:
Homo sapiens (human)
Gene:
RNF220 (55182)
Length:
3042
CDS:
394..2094

Additional Resources:

NCBI RefSeq record:
NM_018150.4
NBCI Gene record:
RNF220 (55182)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_018150.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000162943 GCATGAGAACAACAACCGCTT pLKO.1 1431 CDS 100% 2.160 1.728 N RNF220 n/a
2 TRCN0000375796 AGACTGAAGCACATGTAATAT pLKO_005 2447 3UTR 100% 15.000 10.500 N Rnf220 n/a
3 TRCN0000160783 CGGTGTTCAGTGGTGTATATT pLKO.1 2678 3UTR 100% 15.000 10.500 N RNF220 n/a
4 TRCN0000275285 CGGTGTTCAGTGGTGTATATT pLKO_005 2678 3UTR 100% 15.000 10.500 N RNF220 n/a
5 TRCN0000275334 ACTACACCTCCACCCTCAATT pLKO_005 669 CDS 100% 13.200 9.240 N RNF220 n/a
6 TRCN0000271925 TCGGTGTTCAGTGGTGTATAT pLKO_005 2677 3UTR 100% 13.200 9.240 N Rnf220 n/a
7 TRCN0000275287 GAGCTATCAGTCAGCCTTTAC pLKO_005 783 CDS 100% 10.800 7.560 N RNF220 n/a
8 TRCN0000275376 GATCGGAATGACAGATGTAAG pLKO_005 1003 CDS 100% 10.800 7.560 N RNF220 n/a
9 TRCN0000159227 CCAATCAGTATGCTGAATCAT pLKO.1 715 CDS 100% 5.625 3.938 N RNF220 n/a
10 TRCN0000162152 CGGTTCACTAAAGGTTGATGA pLKO.1 915 CDS 100% 4.950 3.465 N RNF220 n/a
11 TRCN0000162844 CCACAATACACAGAGGCTGAT pLKO.1 1612 CDS 100% 4.050 2.835 N RNF220 n/a
12 TRCN0000161509 GTTCCTATACCTTTGCCTCTA pLKO.1 587 CDS 100% 4.050 2.835 N RNF220 n/a
13 TRCN0000162362 CGTGCATATTCCTTTCACCAA pLKO.1 564 CDS 100% 2.640 1.848 N RNF220 n/a
14 TRCN0000161359 GCAAGGAATATGACTTTGGGA pLKO.1 872 CDS 100% 0.750 0.525 N RNF220 n/a
15 TRCN0000161933 GCGTACACACACACACATTTA pLKO.1 2225 3UTR 100% 13.200 7.920 N RNF220 n/a
16 TRCN0000285343 GCGTACACACACACACATTTA pLKO_005 2225 3UTR 100% 13.200 7.920 N RNF220 n/a
17 TRCN0000376835 CCTGCAAGAACAGCGACATTG pLKO_005 1814 CDS 100% 10.800 8.640 N Rnf220 n/a
18 TRCN0000039526 ACCTGCAAGAACAGCGACATT pLKO.1 1813 CDS 100% 4.950 3.465 N Rnf220 n/a
19 TRCN0000281842 ACCTGCGGAGGATCTACTTAT pLKO_005 2072 CDS 100% 13.200 7.920 N Rnf220 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_018150.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.