Transcript: Human NM_018237.4

Homo sapiens cell division cycle and apoptosis regulator 1 (CCAR1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-06-26
Taxon:
Homo sapiens (human)
Gene:
CCAR1 (55749)
Length:
4658
CDS:
95..3547

Additional Resources:

NCBI RefSeq record:
NM_018237.4
NBCI Gene record:
CCAR1 (55749)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_018237.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000365275 ATTGGTTGAAGCTACTTATAA pLKO_005 652 CDS 100% 15.000 21.000 N CCAR1 n/a
2 TRCN0000056006 GCAGGAAGATATGCTAGGAAA pLKO.1 3079 CDS 100% 4.950 6.930 N CCAR1 n/a
3 TRCN0000056004 GCAGCTTCTATTACACCACTA pLKO.1 854 CDS 100% 4.050 5.670 N CCAR1 n/a
4 TRCN0000056007 CCTACCATTTATACACAGCAA pLKO.1 209 CDS 100% 2.640 3.696 N CCAR1 n/a
5 TRCN0000370344 TGTTGATTAAGACTGCTATTC pLKO_005 1650 CDS 100% 10.800 8.640 N CCAR1 n/a
6 TRCN0000056005 GCCCTAGTATGGAAGATTTAT pLKO.1 1455 CDS 100% 15.000 10.500 N CCAR1 n/a
7 TRCN0000370402 GCGTCGAGAAAGAAGATATAT pLKO_005 2239 CDS 100% 15.000 10.500 N CCAR1 n/a
8 TRCN0000365273 ACCAGATGCTGACCACTTATA pLKO_005 1408 CDS 100% 13.200 9.240 N CCAR1 n/a
9 TRCN0000370345 AGGAAATCTGAAGACGATAAA pLKO_005 2177 CDS 100% 13.200 9.240 N CCAR1 n/a
10 TRCN0000365274 CTCAACCACAGCCCTTATTAC pLKO_005 882 CDS 100% 13.200 9.240 N CCAR1 n/a
11 TRCN0000056003 GCTGCATTACAACAGCAATAT pLKO.1 326 CDS 100% 13.200 9.240 N CCAR1 n/a
12 TRCN0000376588 TGGAGCATCTCCTACCATTTA pLKO_005 199 CDS 100% 13.200 9.240 N CCAR1 n/a
13 TRCN0000138772 GCAGGAGAATCGCTTGAACTT pLKO.1 4256 3UTR 100% 4.950 2.475 Y DCAF11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_018237.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.