Transcript: Mouse NM_018797.2

Mus musculus plexin C1 (Plxnc1), mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Plxnc1 (54712)
Length:
7059
CDS:
1..4725

Additional Resources:

NCBI RefSeq record:
NM_018797.2
NBCI Gene record:
Plxnc1 (54712)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_018797.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000423667 GCTACTCTTTGTCGTTAATTT pLKO_005 4793 3UTR 100% 15.000 21.000 N Plxnc1 n/a
2 TRCN0000423391 GGCCACTATGAGATATCAAAT pLKO_005 3886 CDS 100% 13.200 18.480 N Plxnc1 n/a
3 TRCN0000078949 CCCTCTTCGATTCTGGGTAAA pLKO.1 4260 CDS 100% 10.800 15.120 N Plxnc1 n/a
4 TRCN0000078951 GCAGGTTTCTAGCTCCTAATT pLKO.1 2435 CDS 100% 13.200 10.560 N Plxnc1 n/a
5 TRCN0000437162 GCAGATGTCTGCCGGAATATT pLKO_005 3658 CDS 100% 15.000 10.500 N Plxnc1 n/a
6 TRCN0000427772 CACTGTGCCTGTGGGTATATC pLKO_005 4899 3UTR 100% 13.200 9.240 N Plxnc1 n/a
7 TRCN0000422056 GAAACAACTCTTGCATGTAAA pLKO_005 4665 CDS 100% 13.200 9.240 N Plxnc1 n/a
8 TRCN0000413630 AGAAACTCTTCCGAAGCATTT pLKO_005 4115 CDS 100% 10.800 7.560 N Plxnc1 n/a
9 TRCN0000421301 AGGATATACCAACCTACAAAG pLKO_005 4436 CDS 100% 10.800 7.560 N Plxnc1 n/a
10 TRCN0000078950 CCCGTTACAAAGGTGCACTTT pLKO.1 1428 CDS 100% 4.950 3.465 N Plxnc1 n/a
11 TRCN0000078952 GTGGCATTAAATGTCGTCTTT pLKO.1 3613 CDS 100% 4.950 3.465 N Plxnc1 n/a
12 TRCN0000078948 CCCAGCTATAATGTCTTAGTT pLKO.1 1690 CDS 100% 5.625 3.375 N Plxnc1 n/a
13 TRCN0000060645 CCCTTCCTTGACTACAAACAT pLKO.1 3058 CDS 100% 5.625 3.375 N PLXNC1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_018797.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.