Transcript: Mouse NM_019938.3

Mus musculus polyamine modulated factor 1 binding protein 1 (Pmfbp1), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Pmfbp1 (56523)
Length:
3398
CDS:
92..3160

Additional Resources:

NCBI RefSeq record:
NM_019938.3
NBCI Gene record:
Pmfbp1 (56523)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_019938.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000182574 GCTTTGCGACAAGAAGCGAAA pLKO.1 2054 CDS 100% 4.050 5.670 N Pmfbp1 n/a
2 TRCN0000182231 CCGGGTCAATAAGCAATACCA pLKO.1 349 CDS 100% 3.000 4.200 N Pmfbp1 n/a
3 TRCN0000198992 GAAGATGAAATCGCGGCTTAT pLKO.1 2468 CDS 100% 10.800 7.560 N Pmfbp1 n/a
4 TRCN0000197573 CATGGTTAGTAAAGAAGCTTA pLKO.1 2311 CDS 100% 4.950 3.465 N Pmfbp1 n/a
5 TRCN0000200444 GAGCCTACAACTGGACATCAA pLKO.1 190 CDS 100% 4.950 3.465 N Pmfbp1 n/a
6 TRCN0000197715 GTTTGCAAGAAGTTATGCTTT pLKO.1 3276 3UTR 100% 4.950 3.465 N Pmfbp1 n/a
7 TRCN0000182846 CGTCATCGAGAAGAAGGACAA pLKO.1 1231 CDS 100% 4.050 2.835 N Pmfbp1 n/a
8 TRCN0000198991 GACATCAAGAATCTCCACGAT pLKO.1 203 CDS 100% 2.640 1.848 N Pmfbp1 n/a
9 TRCN0000181560 GCAGAAGATTGCCAATGAGAA pLKO.1 2827 CDS 100% 4.950 2.970 N Pmfbp1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_019938.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.