Transcript: Mouse NM_019946.4

Mus musculus microsomal glutathione S-transferase 1 (Mgst1), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Mgst1 (56615)
Length:
943
CDS:
102..569

Additional Resources:

NCBI RefSeq record:
NM_019946.4
NBCI Gene record:
Mgst1 (56615)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_019946.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000103397 CTATGGAGTTACTTTGTCAAT pLKO.1 512 CDS 100% 4.950 6.930 N Mgst1 n/a
2 TRCN0000302880 CTATGGAGTTACTTTGTCAAT pLKO_005 512 CDS 100% 4.950 6.930 N Mgst1 n/a
3 TRCN0000103395 GCGTGAAAGGAGCAGAGAAAT pLKO.1 662 3UTR 100% 13.200 9.240 N Mgst1 n/a
4 TRCN0000302879 GCGTGAAAGGAGCAGAGAAAT pLKO_005 662 3UTR 100% 13.200 9.240 N Mgst1 n/a
5 TRCN0000103396 CCCACCTGAATGATCTTGAAA pLKO.1 325 CDS 100% 5.625 3.938 N Mgst1 n/a
6 TRCN0000302878 CCCACCTGAATGATCTTGAAA pLKO_005 325 CDS 100% 5.625 3.938 N Mgst1 n/a
7 TRCN0000103399 CCTCATGCACTTCAGAATCTT pLKO.1 410 CDS 100% 5.625 3.938 N Mgst1 n/a
8 TRCN0000302963 CCTCATGCACTTCAGAATCTT pLKO_005 410 CDS 100% 5.625 3.938 N Mgst1 n/a
9 TRCN0000103398 CGCATTCCAGAGGATAACCAA pLKO.1 203 CDS 100% 3.000 2.100 N Mgst1 n/a
10 TRCN0000302881 CGCATTCCAGAGGATAACCAA pLKO_005 203 CDS 100% 3.000 2.100 N Mgst1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_019946.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.