Transcript: Human NM_021248.3

Homo sapiens cadherin 22 (CDH22), mRNA.

Source:
NCBI, updated 2019-06-30
Taxon:
Homo sapiens (human)
Gene:
CDH22 (64405)
Length:
3897
CDS:
644..3130

Additional Resources:

NCBI RefSeq record:
NM_021248.3
NBCI Gene record:
CDH22 (64405)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_021248.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000054329 GCGGGACAACGTCATCAAATA pLKO.1 2632 CDS 100% 13.200 18.480 N CDH22 n/a
2 TRCN0000421002 GATTCTGACCAACGGCATTAA pLKO_005 3333 3UTR 100% 13.200 10.560 N CDH22 n/a
3 TRCN0000054328 CGAATCAGATTTGGACCAGAT pLKO.1 1945 CDS 100% 4.050 3.240 N CDH22 n/a
4 TRCN0000415586 GAAGGCTGTTCACTTACTAAG pLKO_005 3529 3UTR 100% 10.800 7.560 N CDH22 n/a
5 TRCN0000437531 ACACCGAAGCCTACGACATGT pLKO_005 2679 CDS 100% 4.950 3.465 N CDH22 n/a
6 TRCN0000054332 CGTGGGAGAGAACACAGACAT pLKO.1 1558 CDS 100% 4.950 3.465 N CDH22 n/a
7 TRCN0000054330 GCCATCAAGTACACCATCTCA pLKO.1 929 CDS 100% 3.000 2.100 N CDH22 n/a
8 TRCN0000054331 GTCATCAAATACAACGACGAA pLKO.1 2642 CDS 100% 2.640 1.848 N CDH22 n/a
9 TRCN0000094337 CGAGTCGGAGTTCATCATCAA pLKO.1 1093 CDS 100% 4.950 2.970 N Cdh22 n/a
10 TRCN0000094336 GATGAAGACATGCGGGACAAT pLKO.1 2621 CDS 100% 4.950 2.970 N Cdh22 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_021248.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.