Transcript: Mouse NM_021339.2

Mus musculus cell adhesion molecule-related/down-regulated by oncogenes (Cdon), mRNA.

Source:
NCBI, updated 2017-06-18
Taxon:
Mus musculus (mouse)
Gene:
Cdon (57810)
Length:
7236
CDS:
30..3782

Additional Resources:

NCBI RefSeq record:
NM_021339.2
NBCI Gene record:
Cdon (57810)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_021339.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000438591 GTACTGGAGCATGCGTCAATT pLKO_005 948 CDS 100% 13.200 18.480 N Cdon n/a
2 TRCN0000415608 TCTGTGGAAGTTCGTAGTTTA pLKO_005 2352 CDS 100% 13.200 18.480 N Cdon n/a
3 TRCN0000113555 CCGGAACAACAATAGGTGTTT pLKO.1 3344 CDS 100% 4.950 6.930 N Cdon n/a
4 TRCN0000113559 GATATGTTGTACCTCATCGTT pLKO.1 2904 CDS 100% 3.000 2.400 N Cdon n/a
5 TRCN0000412935 CATCAACAATGCACGTTATTA pLKO_005 394 CDS 100% 15.000 10.500 N Cdon n/a
6 TRCN0000415014 CAAAGCTGAGGTGCGCTATAA pLKO_005 470 CDS 100% 13.200 9.240 N CDON n/a
7 TRCN0000113558 CCGAATCTCATGGTTGCATAA pLKO.1 197 CDS 100% 10.800 7.560 N Cdon n/a
8 TRCN0000113557 GCTGGGAAATATACTTGTGAA pLKO.1 1509 CDS 100% 4.950 3.465 N Cdon n/a
9 TRCN0000113556 GCTGTTCTCATCTGCACCATA pLKO.1 3136 CDS 100% 4.950 3.465 N Cdon n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_021339.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.