Transcript: Human NM_021619.3

Homo sapiens PR/SET domain 12 (PRDM12), mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
PRDM12 (59335)
Length:
2478
CDS:
61..1164

Additional Resources:

NCBI RefSeq record:
NM_021619.3
NBCI Gene record:
PRDM12 (59335)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_021619.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000017950 CGAGGTTATCACCTCCGACAT pLKO.1 135 CDS 100% 0.405 0.567 N PRDM12 n/a
2 TRCN0000378327 TACATCAAGTGTGCACGTAAC pLKO_005 547 CDS 100% 6.000 4.800 N PRDM12 n/a
3 TRCN0000378330 TCATGTGGGAGGTGTTCAATG pLKO_005 464 CDS 100% 10.800 7.560 N PRDM12 n/a
4 TRCN0000358491 AGAGTCCTGTGCTTCGGAATG pLKO_005 1569 3UTR 100% 6.000 4.200 N PRDM12 n/a
5 TRCN0000017948 CGTGGACATCTGCAAGAACAA pLKO.1 438 CDS 100% 4.950 3.465 N PRDM12 n/a
6 TRCN0000017951 CTTCTCCAAGACGTGGATCAA pLKO.1 366 CDS 100% 4.950 3.465 N PRDM12 n/a
7 TRCN0000017952 GAGCTGGATGACCTACATCAA pLKO.1 534 CDS 100% 4.950 3.465 N PRDM12 n/a
8 TRCN0000367924 TTCTCCAAGACGTGGATCAAG pLKO_005 367 CDS 100% 4.950 3.465 N PRDM12 n/a
9 TRCN0000017949 AGCATCTTCTACAAGGCCATT pLKO.1 607 CDS 100% 4.050 2.430 N PRDM12 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_021619.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.