Transcript: Mouse NM_022022.3

Mus musculus ubiquitination factor E4B (Ube4b), mRNA.

Source:
NCBI, updated 2019-09-24
Taxon:
Mus musculus (mouse)
Gene:
Ube4b (63958)
Length:
5535
CDS:
727..4248

Additional Resources:

NCBI RefSeq record:
NM_022022.3
NBCI Gene record:
Ube4b (63958)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_022022.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000008435 CCATCGCAATAGAGAAGTTTA pLKO.1 3932 CDS 100% 13.200 18.480 N Ube4b n/a
2 TRCN0000008434 CGCTATCACATTAGCACTATT pLKO.1 3316 CDS 100% 13.200 18.480 N Ube4b n/a
3 TRCN0000413879 GAATAGAGAACTCGGACATTT pLKO_005 4598 3UTR 100% 13.200 18.480 N Ube4b n/a
4 TRCN0000429194 ACATGTATTCTGTGCGATAAC pLKO_005 4712 3UTR 100% 10.800 15.120 N Ube4b n/a
5 TRCN0000011433 CCTTCTAGCAACCCTCAGTTA pLKO.1 4937 3UTR 100% 4.950 6.930 N Ube4b n/a
6 TRCN0000087345 CGGGACCTCCAATAGCTGCAT pLKO.1 839 CDS 100% 0.880 0.704 N LOC436441 n/a
7 TRCN0000436274 AGGTGTTCAAGCAGATCTTTA pLKO_005 1880 CDS 100% 13.200 9.240 N Ube4b n/a
8 TRCN0000414406 GAGCGTGTTTCCCGTTCTTAT pLKO_005 3577 CDS 100% 13.200 9.240 N Ube4b n/a
9 TRCN0000087347 CCAGAGTCTTGGTCTCAATGT pLKO.1 876 CDS 100% 4.950 3.465 N LOC436441 n/a
10 TRCN0000087344 TCCCAGAGTCTTGGTCTCAAT pLKO.1 874 CDS 100% 4.950 3.465 N LOC436441 n/a
11 TRCN0000087343 TGGTCTCAATGTCCACAACAT pLKO.1 885 CDS 100% 4.950 3.465 N LOC436441 n/a
12 TRCN0000008437 CCGAATGATGAGACACGGATA pLKO.1 2500 CDS 100% 4.050 2.835 N Ube4b n/a
13 TRCN0000087346 TCTTGGTCTCAATGTCCACAA pLKO.1 882 CDS 100% 4.050 2.835 N LOC436441 n/a
14 TRCN0000008436 GCAGAAATAGACTACAGCGAT pLKO.1 4000 CDS 100% 2.640 1.848 N Ube4b n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_022022.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.