Transcript: Mouse NM_024458.2

Mus musculus phosducin (Pdc), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Pdc (20028)
Length:
1251
CDS:
97..831

Additional Resources:

NCBI RefSeq record:
NM_024458.2
NBCI Gene record:
Pdc (20028)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_024458.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000034467 CCTACGTTGCTGGTGTACAAA pLKO.1 649 CDS 100% 5.625 7.875 N Pdc n/a
2 TRCN0000064097 CAGGACCCAAAGGAGTAATAA pLKO.1 155 CDS 100% 15.000 10.500 N PDC n/a
3 TRCN0000034465 CCCAAAGGAGTAATAAATGAT pLKO.1 160 CDS 100% 5.625 3.938 N Pdc n/a
4 TRCN0000034464 CCCAATGGTCAAGTTCTGTAA pLKO.1 576 CDS 100% 4.950 3.465 N Pdc n/a
5 TRCN0000034466 GCCTAGGTATGGGTTTGTGTA pLKO.1 414 CDS 100% 4.950 3.465 N Pdc n/a
6 TRCN0000034468 GAATATGGATTACTACCAGAA pLKO.1 757 CDS 100% 4.050 2.835 N Pdc n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_024458.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.