Transcript: Human NM_024689.3

Homo sapiens divergent protein kinase domain 2B (DIPK2B), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
DIPK2B (79742)
Length:
2475
CDS:
51..599

Additional Resources:

NCBI RefSeq record:
NM_024689.3
NBCI Gene record:
DIPK2B (79742)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_024689.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000433812 TTTAGACTGGTCAGCAAATAT pLKO_005 390 CDS 100% 15.000 21.000 N DIPK2B n/a
2 TRCN0000172233 CTCCCGATTCCTTGCTTTCTT pLKO.1 319 CDS 100% 5.625 7.875 N DIPK2B n/a
3 TRCN0000416551 AGGCTACCTTTGCACAATATT pLKO_005 788 3UTR 100% 15.000 10.500 N DIPK2B n/a
4 TRCN0000417131 AGTCAGAACCAGCTACAATTT pLKO_005 179 CDS 100% 13.200 9.240 N DIPK2B n/a
5 TRCN0000417342 TGATAAGGAGCTAGGGCAATT pLKO_005 966 3UTR 100% 10.800 7.560 N DIPK2B n/a
6 TRCN0000166885 CTGCAAATTACTCAGATGATT pLKO.1 343 CDS 100% 5.625 3.938 N DIPK2B n/a
7 TRCN0000168214 CCTCGGTCTTGATAAATGCAA pLKO.1 212 CDS 100% 3.000 2.100 N DIPK2B n/a
8 TRCN0000173070 CCTGAGCTGTTCTTTCTCCTT pLKO.1 125 CDS 100% 2.640 1.848 N DIPK2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_024689.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.