Transcript: Human NM_025138.5

Homo sapiens proline and serine rich 1 (PROSER1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-05-02
Taxon:
Homo sapiens (human)
Gene:
PROSER1 (80209)
Length:
5182
CDS:
848..3682

Additional Resources:

NCBI RefSeq record:
NM_025138.5
NBCI Gene record:
PROSER1 (80209)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_025138.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000424106 GGAAGACCTAGCCGCATAAAT pLKO_005 1295 CDS 100% 15.000 21.000 N PROSER1 n/a
2 TRCN0000420545 TGTTGCACAAGCCGGTTTATC pLKO_005 3394 CDS 100% 13.200 18.480 N PROSER1 n/a
3 TRCN0000168328 GCCGTGCATATACTTCAACAT pLKO.1 2766 CDS 100% 4.950 6.930 N PROSER1 n/a
4 TRCN0000428077 CATCCAATGACACCAATTTAA pLKO_005 2277 CDS 100% 15.000 12.000 N PROSER1 n/a
5 TRCN0000421440 GCAATGAACAATCTGACAAAT pLKO_005 3736 3UTR 100% 13.200 9.240 N PROSER1 n/a
6 TRCN0000167271 CGGAAGATGTTGCTAATGTAT pLKO.1 4780 3UTR 100% 5.625 3.938 N PROSER1 n/a
7 TRCN0000137001 CCAAACCACCTCCTTCAACAT pLKO.1 1404 CDS 100% 4.950 3.465 N PROSER1 n/a
8 TRCN0000134104 CCTCTGTTACTTACTGTACTA pLKO.1 4441 3UTR 100% 4.950 3.465 N PROSER1 n/a
9 TRCN0000133914 CCTTGCAAGAATTACAGCATA pLKO.1 3507 CDS 100% 4.950 3.465 N PROSER1 n/a
10 TRCN0000137485 GCACCAGTATTCACTGCTCTT pLKO.1 2918 CDS 100% 4.050 2.835 N PROSER1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_025138.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.