Transcript: Mouse NM_026375.2

Mus musculus AT hook containing transcription factor 1 (Ahctf1), mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Ahctf1 (226747)
Length:
8831
CDS:
671..7402

Additional Resources:

NCBI RefSeq record:
NM_026375.2
NBCI Gene record:
Ahctf1 (226747)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_026375.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000348119 CAGCTATCGAGCCTATAATTA pLKO_005 1050 CDS 100% 15.000 21.000 N Ahctf1 n/a
2 TRCN0000348120 TACGACTTGATGCGTTTATAT pLKO_005 7573 3UTR 100% 15.000 21.000 N Ahctf1 n/a
3 TRCN0000348121 GCGACTCTGCAGCACCTAATA pLKO_005 5487 CDS 100% 13.200 18.480 N Ahctf1 n/a
4 TRCN0000071348 GCACCTAATATGTTACCGAAA pLKO.1 5498 CDS 100% 4.050 5.670 N Ahctf1 n/a
5 TRCN0000071350 CCACTGAACTAACTACTAATT pLKO.1 4731 CDS 100% 13.200 10.560 N Ahctf1 n/a
6 TRCN0000334175 CCACTGAACTAACTACTAATT pLKO_005 4731 CDS 100% 13.200 10.560 N Ahctf1 n/a
7 TRCN0000348189 GTTTGGCATCAGGGCAAATTT pLKO_005 1608 CDS 100% 15.000 10.500 N Ahctf1 n/a
8 TRCN0000071349 CGCTACAACTACCCTGTAATT pLKO.1 2747 CDS 100% 13.200 9.240 N Ahctf1 n/a
9 TRCN0000071351 GCATATAGATTCAGTGGAGTA pLKO.1 869 CDS 100% 4.050 2.835 N Ahctf1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_026375.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.