Transcript: Mouse NM_026593.3

Mus musculus RIKEN cDNA D730048I06 gene (D730048I06Rik), mRNA.

Source:
NCBI, updated 2017-04-29
Taxon:
Mus musculus (mouse)
Gene:
D730048I06Rik (68171)
Length:
1334
CDS:
97..417

Additional Resources:

NCBI RefSeq record:
NM_026593.3
NBCI Gene record:
D730048I06Rik (68171)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_026593.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000413323 GCATAATCTAGTTCCAGTTGA pLKO_005 417 CDS 100% 4.950 6.930 N D730048I06Rik n/a
2 TRCN0000200652 CATTAATTTACCCATCGTGAT pLKO.1 390 CDS 100% 4.050 5.670 N D730048I06Rik n/a
3 TRCN0000429489 TTGGTATCCCTAGACTTATTA pLKO_005 611 3UTR 100% 15.000 10.500 N D730048I06Rik n/a
4 TRCN0000429138 ACCTGTGATAAGGCTGAATTT pLKO_005 889 3UTR 100% 13.200 9.240 N D730048I06Rik n/a
5 TRCN0000191620 GAACCTGGTATGCAAATGAAA pLKO.1 251 CDS 100% 5.625 3.938 N D730048I06Rik n/a
6 TRCN0000200490 CATACATACTGCTGTAGTCAT pLKO.1 352 CDS 100% 4.950 3.465 N D730048I06Rik n/a
7 TRCN0000191248 CGTGTTTCCATGAATGACAAA pLKO.1 1060 3UTR 100% 4.950 3.465 N D730048I06Rik n/a
8 TRCN0000202380 GCTGAGACTAAGTGCACGAAT pLKO.1 289 CDS 100% 4.950 3.465 N D730048I06Rik n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_026593.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.