Transcript: Mouse NM_026643.5

Mus musculus centrosomal protein 57-like 1 (Cep57l1), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Cep57l1 (103268)
Length:
2151
CDS:
94..1296

Additional Resources:

NCBI RefSeq record:
NM_026643.5
NBCI Gene record:
Cep57l1 (103268)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_026643.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000264944 TATGTTTCTGACTGCTATAAA pLKO_005 1395 3UTR 100% 15.000 21.000 N Cep57l1 n/a
2 TRCN0000264947 GGCAACCCTAAAGGATCTAAG pLKO_005 1144 CDS 100% 10.800 15.120 N Cep57l1 n/a
3 TRCN0000264945 ACTGCGGAGGACAAGATTAAA pLKO_005 652 CDS 100% 15.000 12.000 N Cep57l1 n/a
4 TRCN0000264946 AGAGAAGCAGCGCAGTATAAG pLKO_005 334 CDS 100% 13.200 10.560 N Cep57l1 n/a
5 TRCN0000283245 GCACACCAGGAGCTGATTAAA pLKO_005 391 CDS 100% 15.000 10.500 N Cep57l1 n/a
6 TRCN0000375437 GTCTGACCTGTGGGTACTATT pLKO_005 1611 3UTR 100% 13.200 9.240 N Cep57l1 n/a
7 TRCN0000375438 TCAGCCCAGTCTCGTTGTATT pLKO_005 442 CDS 100% 13.200 9.240 N Cep57l1 n/a
8 TRCN0000375436 CATCAAGACAGTGTCCGTAAA pLKO_005 1072 CDS 100% 10.800 7.560 N Cep57l1 n/a
9 TRCN0000184199 GCATCAAGACAGTGTCCGTAA pLKO.1 1071 CDS 100% 4.050 2.835 N Cep57l1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_026643.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.